Group GenBank
| Group Description |
Protein k-mer graphs generated using data from GenBank https://www.ncbi.nlm.nih.gov/genbank/ are available below. Nodes of the graph represent segments of amino acids. Protein k-mer graphs Name Description A2a.tsv Graph 1 Num. vertices : 170728175 Edge count : 360585172 P1a.tsv Graph 2 Num. vertices : 139353211 Edge count : 297829984 U1a.tsv Graph 3 Nun. vertices : 67716231 Edge count : 138778562 V1r.tsv Graph 4 Num. vertices : 214005017 Edge count : 465410904 V2a.tsv Graph 5 Num. vertices : 55042369 Edge count : 117217600 From the 2018 GraphChallenge, https://graphchallenge.mit.edu. Imported into the SuiteSparse Matrix Collection as "GenBank/kmer_*" where "*" is the 3-letter name above, on July 2018. |
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Displaying all 5 collection matrices
| Id | Name | Group | Rows | Cols | Nonzeros | Kind | Date | Download File |
|---|---|---|---|---|---|---|---|---|
| 2809 | kmer_V2a | GenBank | 55,042,369 | 55,042,369 | 117,217,600 | Undirected Graph | 2015 | MATLAB Rutherford Boeing Matrix Market |
| 2808 | kmer_V1r | GenBank | 214,005,017 | 214,005,017 | 465,410,904 | Undirected Graph | 2015 | MATLAB Rutherford Boeing Matrix Market |
| 2807 | kmer_U1a | GenBank | 67,716,231 | 67,716,231 | 138,778,562 | Undirected Graph | 2015 | MATLAB Rutherford Boeing Matrix Market |
| 2806 | kmer_P1a | GenBank | 139,353,211 | 139,353,211 | 297,829,984 | Undirected Graph | 2015 | MATLAB Rutherford Boeing Matrix Market |
| 2805 | kmer_A2a | GenBank | 170,728,175 | 170,728,175 | 360,585,172 | Undirected Graph | 2015 | MATLAB Rutherford Boeing Matrix Market |