Martin/marine1

chemical oceanography; a marine nitrogen cycle inverse model
Name marine1
Group Martin
Matrix ID 2849
Num Rows 400,320
Num Cols 400,320
Nonzeros 6,226,538
Pattern Entries 6,226,538
Kind Chemical Oceanography Problem
Symmetric No
Date 2018
Author T. Martin, F. Primeau, K. L. Casciotti
Editor T. Davis
Structural Rank
Structural Rank Full
Num Dmperm Blocks
Strongly Connect Components 1
Num Explicit Zeros 0
Pattern Symmetry 92.2%
Numeric Symmetry 0%
Cholesky Candidate no
Positive Definite no
Type real
Download MATLAB Rutherford Boeing Matrix Market
Notes
Martin/marine1: chemical oceanography; a marine nitrogen cycle inverse model   
                                                                               
A matrix submitted by Taylor Martin, Stanford, discussed the following paper:  
                                                                               
Title: Modeling oceanic nitrite concentrations and isotopes using a 3D         
inverse N cycle model                                                          
Authors: Taylor S. Martin(1), Francois Primeau(2), and Karen L. Casciotti(1)   
(1) Stanford University, Department of Earth System Science                    
(2) University of California, Irvine, Department of Earth System Science       
Received: 05 Sep 2018                                                          
Abstract. Nitrite (NO2-) is a key intermediate in the marine nitrogen (N) cycle
and a substrate in nitrification, which produces nitrate (NO3-), as well as    
water column N loss processes, denitrification and anammox. In models of the   
marine N cycle, NO2- is often not considered as a separate state variable,     
since NO3- occurs in much higher concentrations in the ocean. In oxygen        
deficient zones (ODZs), however, NO2- represents a substantial fraction of the 
bioavailable N, and modeling its production and consumption is important to    
understanding the N cycle processes occurring there, especially those where    
bioavailable N is lost from or retained within the water column. Here we       
present the expansion of a global 3D inverse N cycle model to include NO2- as a
reactive intermediate as well as the processes that produce and consume NO2- in
marine ODZs. NO2- accumulation in ODZs is accurately represented by the model  
involving NO3- reduction, NO2- reduction, NO2- oxidation, and anammox. We model
both 14N and 15N and use a compilation of oceanographic measurements of NO3-   
and NO2- concentrations and isotopes to place a better constraint on the N     
cycle processes occurring. The model is optimized using a range of isotope     
effects for denitrification and NO2- oxidation, and we find that the larger    
(more negative) inverse isotope effects for NO2- oxidation along with          
relatively high rates of NO2- oxidation give a better simulation of NO3- and   
NO2- concentrations and isotopes in marine ODZs.                               
                                                                               
How to cite: Martin, T. S., Primeau, F., and Casciotti, K. L.: Modeling        
oceanic nitrite concentrations and isotopes using a 3D inverse N cycle model,  
Biogeosciences Discuss., https://doi.org/10.5194/bg-2018-397, in review, 2018.