Pajek/yeast
Pajek network: yeast protein interaction network
| Name |
yeast |
| Group |
Pajek |
| Matrix ID |
1533 |
|
Num Rows
|
2,361 |
|
Num Cols
|
2,361 |
|
Nonzeros
|
13,828 |
|
Pattern Entries
|
13,828 |
|
Kind
|
Undirected Graph |
|
Symmetric
|
Yes |
|
Date
|
2003 |
|
Author
|
S. Sun, L. Ling, N. Zhang, G. Li, R. Chen |
|
Editor
|
V. Batagelj |
| Structural Rank |
|
| Structural Rank Full |
|
|
Num Dmperm Blocks
|
|
|
Strongly Connect Components
|
101 |
|
Num Explicit Zeros
|
0 |
|
Pattern Symmetry
|
100% |
|
Numeric Symmetry
|
100% |
|
Cholesky Candidate
|
no |
|
Positive Definite
|
no |
|
Type
|
binary |
| SVD Statistics |
| Matrix Norm |
1.948610e+01 |
| Minimum Singular Value |
7.187592e-41 |
| Condition Number |
2.711075e+41
|
| Rank |
1,644 |
| sprank(A)-rank(A) |
|
| Null Space Dimension |
717 |
| Full Numerical Rank? |
no |
| Download Singular Values |
MATLAB
|
| Download |
MATLAB
Rutherford Boeing
Matrix Market
|
| Notes |
------------------------------------------------------------------------------
Pajek network converted to sparse adjacency matrix for inclusion in UF sparse
matrix collection, Tim Davis. For Pajek datasets, See V. Batagelj & A. Mrvar,
http://vlado.fmf.uni-lj.si/pub/networks/data/.
------------------------------------------------------------------------------
Yeast protein interaction / long names
---------------------------------------
Dongbo Bu, etal.: Topological structure analysis of the
protein-protein interaction network in budding yeast.
Nucleic Acids Research, 2003, Vol. 31, No. 9 2443-2450
http://www.bioinfo.org.cn/PIN/
http://www.imb-jena.de/jcb/ppi/PPI_PDF_free/bu2003.pdf
transformed in Pajek format: V. Batagelj, 25. July 2003
-----
Yeast protein interaction / PIN class
-------------------------------------
Dongbo Bu, etal.: Topological structure analysis of the
protein-protein interaction network in budding yeast.
Nucleic Acids Research, 2003, Vol. 31, No. 9 2443-2450
http://www.bioinfo.org.cn/PIN/
transformed in Pajek format: V. Batagelj, 25. July 2003
PIN class encoding:
1-T, 2-M, 3-U, 4-C, 5-F, 6-P, 7-G, 8-D, 9-O, 10-E, 11-R, 12-B, 13-A
-----
|
